Powerpoint Presentation: Biochemistry

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© 2007 Paul Billiet

ODWS

BIOCHEMISTRY

CARBON

Tetravalent

4 different bonds

 variety

 isomerism

Forms long chains (polymers)

 macromolecules and ring structures

Tetrahedral structure

3-D variation

 optical isomerism

© 2007 Paul Billiet

ODWS

Organic compounds

 Compounds containing carbon found in living organisms

Not including carbonates, hydrogen carbonates,

CO

2 or CO

Often based upon a skeleton of carbon

 An infinite variety possible

 Evolution has chosen a few for use in living organisms

 There are four principal groups: sugars, fatty acids, amino acids and nucleotides

© 2007 Paul Billiet

ODWS

CARBOHYDRATES (CH

2

O)

n

Organization: Monosaccharides,

Disaccharides, Polysaccharides

Monosaccharides

 5C pentoses (eg ribose , deoxyribose )

 6C hexoses (eg glucose, fructose, galactose )

GLUCOSE

CH

2

OH

OH

CH

2

OH

O

C

H

C O H

C

H

H H

H

C

H

OH

H

C

OH

C C

RIBOSE

OH

C C

OH

© 2007 Paul Billiet

ODWS

OH

H OH

Glycoside linkage to form disaccharides

The two sugars are joined by condensation and may be broken by hydrolysis

H

C

OH

C

H

CH

2

OH

C

H

OH

O H

H

H

C

OH

C

C

OH OH

C

H

CH

2

OH

C

H

OH

O H

H

C

OH

C

OH

© 2007 Paul Billiet

ODWS

A disaccharide

H

C

OH

C

H

CH

2

OH

C

H

OH

O H H

H

C

OH

C

O

C

C

H

CH

2

OH

C

H

OH

O H

H

C

OH

C

OH

+ H

2

O

© 2007 Paul Billiet

ODWS

Different monosaccharides can be used

 sucrose = glucose + fructose

 lactose = glucose + galactose

 maltose = glucose + glucose

© 2007 Paul Billiet

ODWS

Polysaccharides

Macromolecules

 Common ones based upon glucose

Branched polysaccharides

 Amylose & amylopectin ( starches ) are synthesised in plants.

 Glycogen is synthesised in animals, more highly branched than starches = more compact

Unbranched polysaccharides

 Cellulose in plant cell walls

© 2007 Paul Billiet

ODWS

CARBOHYDRATE FUNCTIONS

Sugars (mono and disaccharides) small molecules soluble in water :

 Maintenance of osmotic balance (e.g. salts in blood plasma, plant cell turgidity);

 transport of energy reserves (e.g. glucose in blood or sucrose in sap); energy substrate (respiration and photosynthesis); energy store (sugar cane); flavouring (fruits); reward (nectar); precursors (building blocks) of polysaccharides, nucleotides and amino acids

© 2007 Paul Billiet

ODWS

CARBOHYDRATE FUNCTIONS

 Polysaccharides Large molecules insoluble in water :

 Osmotically inactive carbohydrate storage,

(seeds, roots, chloroplasts);

 Structural (cellulose in plants)

© 2007 Paul Billiet

ODWS

LIPIDS C, H, O

 More hydrogen ( more reduced ) than carbohydrates.

 Insoluble in water , soluble in organic solvents (alcohols, acetone, chloroform etc)

© 2007 Paul Billiet

ODWS

Fatty acids: carboxylic acid + long hydrocarbon chain

A saturated fatty acid

Carboxylic acid

O

CH

3

Hydrocarbon chain

C

OH

An unsaturated fatty acid

CH

3

C

O

OH

© 2007 Paul Billiet

ODWS

Saturated fatty acids Unsaturated fatty acids no double bonds one or more double bonds abundant in fats more reduced more energy high melting point abundant in oils less reduced less energy low melting point

© 2007 Paul Billiet

ODWS

Fats and Oils

CH

3 fatty acids + glycerol (1, 2 or 3 = mono , di or triglycerides)

O

C

OH

O

HO - CH

2

CH C

3

OH HO - CH

Condensation reactions

HO – CH

2

© 2007 Paul Billiet

ODWS

Two fatty acids joining glycerol

= A diglyceride

O

CH

3

C

O

O - CH

3

+

CH

3

C

O - CH

2H

2

0

HO - CH

3

© 2007 Paul Billiet

ODWS

Phospholipids

 in lipoprotein membranes (plasma, nuclear, mitochondrial etc.)

© 2007 Paul Billiet

ODWS

Other lipids

Steroids: multiple ring structures (e.g. cholesterol)

 Functions: cell membrane structure, digestion

(help to emulsify fats), hormones (testosterone etc), vitamins (e.g. Vitamin D), poisons

Waxes: long chain alcohol + fatty acids

 Water proof coating to leaves, fur feathers, insect exoskeletons.

 Used by bees to construct their honey combs.

© 2007 Paul Billiet

ODWS

LIPID FUNCTIONS IN GENERAL

 STRUCTURAL: biological membranes (phospholipids, steroids, glycolipids), cushioning (fat deposits round the kidneys)

ELECTRICAL INSULATION: myelin sheath round axons

THERMAL INSULATION: subcutaneous fat deposits.

WATER PROOFING: waxes and oils

ENERGY STORE AND SUBSTRATE: very condensed form of energy (37 kJ g-1) used by animals and seeds.

HORMONES: steroids

VITAMINS: precursor to Vit D

BUOYANCY: oil droplets in plankton

© 2007 Paul Billiet ODWS

AMINO ACIDS & PROTEINS: C, H, O, N, S arginine aspartic acid

© 2007 Paul Billiet

ODWS methionine cysteine phenylalaline

Amino acids

 amino group , carboxyl group , hydrogen and a variable side group

(residue) each joined to a central carbon atom

R

H

2

N -CCOOH

H

© 2007 Paul Billiet

ODWS

Types of amino acids

 Amino end and carboxyl end can be ionised NH 3+ and COO to give acidic and basic characteristics

 At pH 7 both groups are ionised.

 The residues are side chains which give the individual properties to the amino acid

(acidic, basic, neutral and nonpolar)

© 2007 Paul Billiet

ODWS

Functions of amino acids

 Protein synthesis, energy reserve, hormones (thyroxin)

 20 different amino acids used in protein synthesis though others do occur in nature.

 Essential amino acids cannot be synthesised by the organism and must form part of their diet

© 2007 Paul Billiet

ODWS

The peptide bond

 Carboxyl group + amino group form a strong covalent bond releasing water in to process water = a condensation reaction

(the reverse is hydrolysis)

 Amino acids join together in a long chain:

N terminal end to C terminal end = a polypeptide

© 2007 Paul Billiet

ODWS

R O

H

N C C-OH

H

H

Condensation reaction

R O

H

N C C-OH

H

H

A dipeptide is formed

R O

H

N C C

H

H

H R O

N C C OH

H

The peptide bond

+ H

2

O

© 2007 Paul Billiet

ODWS

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